The U.S. Environmental Protection Agency (EPA) formed a Heavy-Duty Engine Working Group (HDEWG) in the Mobile Sources Technical Advisory Subcommittee in 1995. The goal of the HDEWG was to help define the role of the fuel in meeting the future emissions standards in advanced technology engines (beyond 2004 regulated emissions levels). A three-phase program was developed. This paper presents the results of the statistical analysis of the data collected in the Phase II program. Included is a description of the design of the fuel test matrix, and a listing of the regression equations developed to predict emissions as a function of fuel density, cetane number, monoaromatics, and polyaromatics. Also included is a description of selected analyses of the emissions from a smaller set of fuel data that allowed direct comparison of the effects of natural and boosted cetane number.