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Designing an efficient transient thermal system model has become a very important task in improving fuel economy. As opposed to steady-state thermal models, part of the difficulty in designing a transient model is optimizing a set of input parameters. The first objective in this work is to develop an engine compatible physics-based 1D thermal model for fuel economy and robust control. In order to capture and study the intrinsic thermo-physical nature, both generic “Three Mass” and “Eight Mass” engine models are developed. The models have been correlated heuristically using Simulink. This correlation and calibration process is challenging and time consuming, especially in the case of the 8-mass model. Hence, in this work a Particle Swarm Optimizer (PSO) method has been introduced and implemented on a simple 3-mass and more complex 8-mass engine thermal model in order to optimize the input parameters.