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Automotive engines especially turbocharged diesel engines produce higher level of emissions during transient operation than in steady state. In order to improve understanding of the engine transients and develop advanced technologies to reduce the transient emissions, the engine researchers require accurate data acquisition and appropriate post-processing techniques which are capable of dealing with noise and synchronization issues. Four alternative automated methods namely FFT (Fast Fourier Transform), low-pass, linear and zero-phase filters were implemented on in-cylinder pressure. The data of each individual cycle was compared and analyzed for the suitability of combustion diagnostic. FFT filtering was the best suited method since it eliminated most pressure fluctuation and provided smooth rate of heat release profiles for each cycle.