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Exhaust gas recirculation (EGR) has been employed in a diesel engine to reduce NOx emissions by diluting the fresh air charge with gases composed of primarily N2, CO2, H2O, and O2 from the engines exhaust stream. The addition of EGR reduces the production of NOx by lowering the peak cylinder gas temperature and reducing the concentration of O2 molecules, both of which contribute to the NOx formation mechanism. The amount of EGR has been typically controlled using an open loop control strategy where the flow of EGR was calibrated to the engine speed and load and controlled by the combination of an EGR valve and the ratio of the boost and exhaust back pressures. When oxygenated biofuels with lower specific energy are used, the engine control unit (ECU) will demand a higher fuel rate to maintain power output, which can alter the volumetric flow rate of EGR. In addition, oxygenated biofuels affect the oxygen concentration in the intake manifold gas stream.