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The paper focuses on the development of a mesh moving method based on non-conformal topologically changing grids applied to the simulation of IC engines, where the prescribed motion of piston and valves is accomplished by rigidly translating the sub-domain representing the moving component. With respect to authors previous work, a more robust and efficient algorithm to handle the connectivity of non-conformal interfaces and a mesh-motion solver supporting multiple layer addition/removal of cells, to decouple the time-step constraints of the mesh motion and of the fluid dynamics, has been implemented as a C++ library to extend the already existing classes for dynamic mesh handling of the finite-volume, open-source CFD code OpenFOAM®. Other new features include automatic decomposition of large multiple region domains to preserve processors load balance with topological changes for parallel computations and additional tools for automatic preprocessing and case setup.