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The present study extends the recently developed KIVA-GA computer code to incorporate a generalized piston bowl geometry parameterization and multi-mode optimization. The new code was used to optimize the combustion chamber geometry of a small-bore automotive Diesel engine. The Genetic Algorithm (GA) merit function, which was calculated with a modified version of the KIVA-3V engine simulation code, included NOx, unburned HC, soot, and fuel consumption. A novel parameterization was included in KIVA-GA that allows for a variable number of parameters to define the bowl shape. The in-house G-Smooth grid generation package was used to create the KIVA grids with a specified compression ratio and mesh resolution. The improved KIVA-GA methodology was used to optimize engine emissions and performance simultaneously for two operating conditions.