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An integrated system model containing sub-models for a multi-cylinder diesel engine, NOx and soot(PM) emissions, diesel oxidation catalyst (DOC) and diesel particulate filter (DPF) has been developed to simulate the engine and aftertreatment systems at transient engine operating conditions. The objective of this work is two-fold; ensure correct implementation of the integrated system level model and apply the integrated model to understand the fuel economy trade-off for various DPF regeneration strategies. The current study focuses on a 1.9L turbocharged diesel engine and its exhaust system. The engine model was built in GT-Power and validated against experimental data at full-load conditions. The DPF model is calibrated for the current engine application by matching the clean DPF pressure drop for different mass flow rates. Load, boost pressure, speed and EGR controllers are tuned and linked with the current engine model.