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This report describes the first two parts of a three-phase project to develop and test a spacecraft-compatible capillary electrophoresis (CE) instrument. This instrument is designed to monitor the quality of recycled potable water aboard spacecraft such as the International Space Station. Phase I involved selecting and validating methods for low mass-to-charge ratio (m/z) cations and anions by using a slightly modified commercial CE instrument as a model. The analytical performance of several published CE methods was assessed for their ability to detect targeted anions and cations listed in a NASA water quality standard. Direct and indirect UV absorption detection at a single wavelength (214 nm) was used, and separation selectivity and sensitivity were optimized at the expense of analysis time. Phase II focused on building a breadboard CE instrument and flight-testing it on NASA's KC-135 parabolic aircraft.