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Testing real-time vehicular systems challenges the tester to design test cases for concurrent and sequential input events, emulating unexpected user and usage profiles. The vehicle response should be robust to unexpected user actions. Sequence Covering Arrays (SCA) offer an approach which can emulate such unexpected user actions by generating an optimized set of test vectors which cover all possible t-way sequences of events. The objective of this research was to find an efficient nonfunctional sequence testing (NFST) strategy for testing the robustness of real-time automotive embedded systems measured by their ability to recover (prove-out test) after applying sequences of user and usage patterns generated by combinatorial test algorithms, considered as “noisy” inputs. The method was validated with a case study of an automotive embedded system tested at Hardware-In-the-Loop (HIL) level. The random sequences were able to alter the system functionality observed at the prove-out test.