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In the paper at hand a model-based development approach for a diagnostic system for a multifunctional fuel cell system architecture will be presented. The approach consists primarily of four parts. The first part is a description of general steps needed to build an accurate component-based model of the system using a state of the art model-based diagnostic reasoning tool. As a first result there will be a static simulation model for nominal system behavior. The second part of the approach deals with the identification of safety critical failure conditions (SCFC) at a system level, e.g. low Power. The SCFCs are then mapped into the model. This means that categorized physical quantities and monitoring executives are chosen, that are appropriate for representing the specific SCFCs, e.g. low voltage at outlet of DC-DC converter module. According to step two there will be conflicts, meaning discrepancies between the simulated nominal and the mapped behavior.