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The study investigates the ride comfort of a rail vehicle with semi-active suspension control and its effect on train vertical dynamics. The Harmony Search algorithm optimizes the gains of a proportional integral derivative (PID) controller using the self-adaptive global best harmony search method (SGHS) due to its effectiveness in reducing the tuning time and offering the least objective function value. Magnetorheological (MR) dampers are highly valuable semi-active devices for vibration control applications rather than active actuators in terms of reliability and implementation cost. A quarter-rail vehicle model consisting of six degrees of freedom (6-DOF) is simulated using MATLAB/Simulink software to evaluate the proposed controller's effectiveness. The simulated results show that the optimized PID significantly improves ride comfort compared to passive.