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The research and development of data-driven highly automated driving system components such as trajectory prediction, motion planning, driving test scenario generation, and safety validation all require large amounts of naturalistic vehicle trajectory data. Therefore, a variety of data collection methods have emerged to meet the growing demand. Among these, camera-equipped drones are gaining more and more attention because of their obvious advantages. Specifically, compared to others, drones have a wider field of bird's eye view, which is less likely to be blocked, and they could collect more complete and natural vehicle trajectory data. Besides, they are not easily observed by traffic participants and ensure that the human driver behavior data collected is realistic and natural. In this paper, we present a complete vehicle trajectory data extraction framework based on aerial videos. It consists of three parts: 1) objects detection, 2) data association, and 3) data cleaning.